Publications -Publicaciones

MICROBIAL DIVERSITY AND METAGENOMICS IN EXTREME ENVIRONMENTS

Ramos-Madrigal, C., Martínez-Romero, E., Tapia-Torres, Y., & Servín-Garcidueñas, L. E. (2025). 16S rRNA gene amplicon sequences from coastal sediments at the Sonoran Desert and Gulf of California interface. Microbiology Resource Announcements, 14(11), e0100325. https://doi.org/10.1128/mra.01003-25

Ramos-Madrigal, C., Martínez-Romero, E., Tapia-Torres, Y., & Servín-Garcidueñas, L. E. (2024). Bacterial diversity profiles of desert sand and salt crusts from the Gran Desierto de Altar, Sonora, Mexico. Diversity, 16 (12), 745.
https://doi.org/10.3390/d16120745

Marín-Paredes, R., Peña-Ocaña, B. A., Martínez-Romero, E., Gutiérrez-Sarmiento, W., Ruíz-Valdiviezo, V., Jasso-Chávez, R., & Servín-Garcidueñas, L. E. (2024). Metagenome-Assembled Genome of “Candidatus Aramenus sp. CH1″ from the Chichon volcano, Mexico. Microbiology Resource Announcements, 13(8), e0052624.
https://doi.org/10.1128/mra.00526-24

Marín-Paredes, R., Bolívar-Torres, H. H., Coronel-Gaytán, A., Martínez-Romero, E., & Servín-Garcidueñas, L. E. (2023). A metagenome from a steam vent in Los Azufres geothermal field shows an abundance of Thermoplasmatales archaea and bacteria from the phyla Actinomycetota and Pseudomonadota. Current Issues in Molecular Biology, 45, 5849–5864.
https://doi.org/10.3390/cimb45070370

Bolívar-Torres, H. H., Marín-Paredes, R., Ramos-Madrigal, C., & Servín-Garcidueñas, L. E. (2022). Metagenome-Assembled Genome of Acidibrevibacterium fodinaquatile FLA01 from fumarole sediments from the Los Azufres geothermal field. Microbiology Resource Announcements, 11, e0082322.
https://doi.org/10.1128/mra.00823-22

Ramos-Madrigal, C., Martínez-Romero, E., Tapia-Torres, Y., & Servín-Garcidueñas, L. E. (2022). Bacterial diversity profiling of desert sand from Tierra Caliente, Mexico, based on 16S rRNA gene amplicon sequencing. Microbiology Resource Announcements, 11, e0078222.
https://doi.org/10.1128/mra.00782-22

Marín-Paredes, R., Tapia-Torres, Y., Martínez-Romero, E., Quesada, M., & Servín-Garcidueñas, L. E. (2021). Metagenome assembly and metagenome-assembled genome of Candidatus Aramenus sulfurataquae from thermal sediments of Los Azufres volcanic complex. Microbiology Resource Announcements, 10, e0037921.
https://doi.org/10.1128/MRA.00379-21

Peña-Ocaña, B. A., Ovando-Ovando, C. I., Puente-Sánchez, F., Tamames, J., Servín-Garcidueñas, L. E., González-Toril, E., Gutiérrez-Sarmiento, W., Jasso-Chávez, R., & Ruíz-Valdiviezo, V. M. (2021). Metagenomic and metabolic analyses of poly-extreme microbiome from an active crater volcano lake. Environmental Research, 203, 111862.
https://doi.org/10.1016/j.envres.2021.111862

Chen, L. X., Méndez-García, C., Dombrowski, N., Servín-Garcidueñas, L. E., Eloe-Fadrosh, E. A., Fang, B. Z., Luo, Z. H., Tan, S., Zhi, X. Y., Hua, Z. S., Martinez-Romero, E., Woyke, T., Huang, L. N., Sánchez, J., Peláez, A. I., Ferrer, M., Baker, B. J., & Shu, W. S. (2018). Metabolic versatility of small archaea Micrarchaeota and Parvarchaeota. ISME Journal, 12, 756–775.
https://doi.org/10.1038/s41396-017-0002-z

Servín-Garcidueñas, L. E., & Martínez-Romero, E. (2014). Draft genome sequence of the Sulfolobales archaeon AZ1, obtained through metagenomic analysis of a Mexican hot spring. Genome Announcements, 2 (2), e00164-14.
https://doi.org/10.1128/genomeA.00164-14

Servín-Garcidueñas, L. E., Peng, X., Garrett, R. A., & Martínez-Romero, E. (2013). Genome sequence of a novel archaeal fusellovirus assembled from the metagenome of a Mexican hot spring. Genome Announcements, 1 (3), e00164-13.
https://doi.org/10.1128/genomeA.00164-13

Servín-Garcidueñas, L. E., Peng, X., Garrett, R. A., & Martínez-Romero, E. (2013). Genome sequence of a novel archaeal rudivirus recovered from a Mexican hot spring. Genome Announcements, 1 (1), e00040-12.
https://doi.org/10.1128/genomeA.00040-12

Servín-Garcidueñas, L. E., Garrett, R. A., Amils, R., & Martínez-Romero, E. (2013). Genome sequence of the acidophilic bacterium Acidocella sp. strain MX-AZ02. Genome Announcements, 1 (1), e00041-12.
https://doi.org/10.1128/genomeA.00041-12

Servín-Garcidueñas, L. E., & Martínez-Romero, E. (2012). Complete mitochondrial and plastid genomes of the green microalga Trebouxiophyceae sp. strain MX-AZ01 isolated from a highly acidic geothermal lake. Eukaryotic Cell, 11 (11), 1417–1418.
https://doi.org/10.1128/EC.00244-12

Agricultural microbiology, rhizobia and legume symbiosis

Servín-Garcidueñas, L. E., Guerrero, G., Rogel-Hernández, M. A., & Martínez-Romero, E. (2019). Genome sequence of Rhizobium jaguaris CCGE525T, a species isolated from Calliandra grandiflora nodules from a rain forest in Mexico. Microbiology Resource Announcements, 8, e01584-18.
https://doi.org/10.1128/MRA.01584-18

Ramírez-Puebla, S. T., Hernández, M. A. R., Guerrero Ruiz, G., Ormeño-Orrillo, E., Martínez-Romero, J. C., Servín-Garcidueñas, L. E., Núñez-de la Mora, A., Amescua-Villela, G., Negrete-Yankelevich, S., & Martínez-Romero, E. (2019). Nodule bacteria from the cultured legume Phaseolus dumosus with common tropici phenotypic characteristics and symbiovar but distinctive chromids. Systematic and Applied Microbiology, 42 (4), 373–382.
https://doi.org/10.1016/j.syapm.2018.12.007

Servín-Garcidueñas, L. E., Rogel, M. A., Ormeño-Orrillo, E., Zayas-del Moral, A., Sánchez, F., & Martínez-Romero, E. (2016). Complete genome sequence of Bradyrhizobium sp. strain CCGE-LA001 isolated from field nodules of the wild bean Phaseolus microcarpus. Genome Announcements, 4 (2), e00126-16.
https://doi.org/10.1128/genomeA.00126-16

Ormeño-Orrillo, E., Servín-Garcidueñas, L. E., Rogel, M. A., González, V., Peralta, H., Mora, J., Martínez-Romero, J., & Martínez-Romero, E. (2015). Taxonomy of rhizobia and agrobacteria from the Rhizobiaceae family in light of genomics. Systematic and Applied Microbiology, 38 (4), 287–291.
https://doi.org/10.1016/j.syapm.2014.12.002

Servín-Garcidueñas, L. E., Zayas-del Moral, A., Ormeño-Orrillo, E., Rogel, M. A., Delgado-Salinas, A., Sánchez, F., & Martínez-Romero, E. (2014). Symbiont shift towards Rhizobium nodulation in a group of phylogenetically related Phaseolus species. Molecular Phylogenetics and Evolution, 79, 1–11.
https://doi.org/10.1016/j.ympev.2014.06.006

Ormeño-Orrillo, E., Servín-Garcidueñas, L. E., Imperial, J., Rey, L., Ruiz-Argueso, T., & Martínez-Romero, E. (2013). Phylogenetic evidence of the transfer of nodZ and nolL genes from Bradyrhizobium to other rhizobia. Molecular Phylogenetics and Evolution, 67 (2), 626–630.
https://doi.org/10.1016/j.ympev.2013.03.003

Servín-Garcidueñas, L. E., Rogel, M. A., Ormeño-Orrillo, E., Delgado-Salinas, A., Martínez-Romero, J., Sánchez, F., & Martínez-Romero, E. (2012). Genome sequence of Rhizobium sp. strain CCGE510, a symbiont isolated from nodules of the endangered wild bean Phaseolus albescens. Journal of Bacteriology, 194 (22), 6310–6311.
https://doi.org/10.1128/JB.01536-12

Olivares, J. E., Díaz-Camino, C., Estrada-Navarrete, G., Alvarado-Affantranger, X., Rodríguez-Kessler, M., Zamudio, F. Z., Olamendi-Portugal, T., Márquez, Y., Servín, L. E., & Sánchez, F. (2011). Nodulin 41, a novel late nodulin of common bean with peptidase activity. BMC Plant Biology, 11, 134.
https://doi.org/10.1186/1471-2229-11-134

EVOLUTION AND GENOMICS OF SYMBIONTS IN INSECTS, ARTHROPODS AND OTHER ANIMALS

Martínez-Romero, E., Aguirre-Noyola, J. L., Bustamante-Brito, R., González-Román, P., Hernández-Oaxaca, D., Higareda-Alvear, V., Montes-Carreto, L. M., Martínez-Romero, J. C., Rosenblueth, M., & Servín-Garcidueñas, L. E. (2021). We and herbivores eat endophytes. Microbial Biotechnology, 14 (4), 1282–1299.
https://doi.org/10.1111/1751-7915.13688

Ramírez-Puebla, S. T., Servín-Garcidueñas, L. E., Ormeño-Orrillo, E., Vera-Ponce de León, A., Rosenblueth, M., Delaye, L., Martínez, J., & Martínez-Romero, E. (2015). Species in Wolbachia? Proposal for the designation of ‘Candidatus Wolbachia bourtzisii’, ‘Candidatus Wolbachia onchocercicola’, ‘Candidatus Wolbachia blaxteri’, ‘Candidatus Wolbachia brugii’, ‘Candidatus Wolbachia taylori’, ‘Candidatus Wolbachia collembolicola’, and ‘Candidatus Wolbachia multihospitum’ for the different species within Wolbachia supergroups. Systematic and Applied Microbiology, 38 (6), 390–399.
https://doi.org/10.1016/j.syapm.2015.05.005

Ramírez-Puebla, S. T., Servín-Garcidueñas, L. E., Ormeño-Orrillo, E., Vera-Ponce de León, A., Rosenblueth, M., Delaye, L., Martínez, J., & Martínez-Romero, E. (2016). A response to Lindsey et al. “Wolbachia pipientis should not be split into multiple species: A response to Ramírez-Puebla et al.” Systematic and Applied Microbiology, 39 (4), 223–225.
https://doi.org/10.1016/j.syapm.2016.03.004

Degli-Esposti, M., Rosas-Pérez, T., Servín-Garcidueñas, L. E., Bolaños, L. M., Rosenblueth, M., & Martínez-Romero, E. (2015). Molecular evolution of cytochrome bd oxidases across proteobacterial genomes. Genome Biology and Evolution, 7 (3), 801–820.
https://doi.org/10.1093/gbe/evv032

Bolaños, L. M., Servín-Garcidueñas, L. E., & Martínez-Romero, E. (2015). Arthropod–Spiroplasma relationship in the genomic era. FEMS Microbiology Ecology, 91 (1), 1–8.
https://doi.org/10.1093/femsec/fiu008

Ramírez-Puebla, S. T., Servín-Garcidueñas, L. E., Jiménez-Marín, B., Bolaños, L. M., Rosenblueth, M., Martínez, J., Rogel, M. A., Ormeño-Orrillo, E., & Martínez-Romero, E. (2013). Gut and root microbiota commonalities. Applied and Environmental Microbiology, 79 (1), 2–9.
https://doi.org/10.1128/AEM.02553-12

Servín-Garcidueñas, L. E., Sánchez-Quinto, A., & Martínez-Romero, E. (2014). Draft genome sequence of Commensalibacter papalotli MX01, a symbiont identified from the guts of overwintering monarch butterflies. Genome Announcements, 2 (2), e00128-14.
https://doi.org/10.1128/genomeA.00128-14

Servín-Garcidueñas, L. E., & Martínez-Romero, E. (2014). Complete mitochondrial genome recovered from the gut metagenome of overwintering monarch butterflies, Danaus plexippus (Lepidoptera: Nymphalidae, Danainae). Mitochondrial DNA, 25 (4), 427–428.
https://doi.org/10.3109/19401736.2013.809441

MICROBIOLOGY AND Scientific education

Meštrović, T., Cevik, M., Pinto, T. C. A., Barać, A., Servín-Garcidueñas, L. E., & Ong, D. S. Y. (2019). The convergent effect of international collaboration between young leaders of two global societies: Strengthening microbiology education and training practices worldwide. Journal of Microbiology & Biology Education, 20 (1), 20.1.27.
https://doi.org/10.1128/jmbe.v20i1.1669

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